.. jMSA documentation master file, created by
   sphinx-quickstart on Tue May  5 09:33:13 2020.
   You can adapt this file completely to your liking, but it should at least
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jMSA project: scoring multiple sequence alignments in Java
==========================================================

jMSA is a collaborative project of the students of the "Programación Avanzada in Bionformatics" subject
(Health Engineering degree, University of Málaga). The project focuses on providing a set of scores for
the `multiple sequence alignment <https://en.wikipedia.org/wiki/Multiple_sequence_alignment>`_  (MSA).

.. toctree::
   :maxdepth: 2
   :caption: Index:

   problem.rst
   installation.rst
   alignment_tools.rst
   how_to_score.rst
   scores.rst
   substitutionMatrix.rst
   utils.rst
   examples.rst